Tandy Warnow

Contact

Department of Computer Sciences
The University of Texas at Austin
Taylor Hall 2.124
Austin, TX 78712-1188
phone: +1 (512) 471 9724
fax: +1 (512) 471 8885
Personal Homepage

Education

1991Ph.D. University of California, Berkeley, Mathematics
1992-1993Postdoc at Sandia National Laboratories

Academic Positions

1993-1998Assistant Professor in the Department of Computer
Sciences at the University of Pennsylvania
1998-1999Associate Professor (tenured),
Department of Computer Sciences,
the University of Pennsylvania.
1999-2003Associate Professor,
Department of Computer Sciences
The University of Texas at Austin
2003-presentProfessor
Department of Computer Sciences
The University of Texas at Austin

Research interests

I work on evolutionary history methodology and algorithms in Biology and Historical Linguistics. My recent work focuses on four major issues, all related toevolutionary history reconstruction:
  • The analytical study of convergence rates of different methods, and thedevelopment of provablyfast converging methods.
  • Fast techniques for NP-hard optimization problems, such asmaximum likelihood and maximum parsimony.Our research projecthas produceda very powerful technique called "Rec-I-DCM3" fordramatically speeding upeven the bestof the current heuristics for maximum parsimonyon large dataset analyses.
  • The inference of complex evolutionaryhistories. In this area, I have focusedon the inference of evolution fromwholegenomes, andthe detection and inference of reticulate evolution.
  • Computational phylogenetics in historical linguistics(see alsothis page).

Select Publications

  1. T. Warnow, S.N. Evans, D. Ringe, and L. Nakhleh,"A stochastic model of language evolution that incorporates homoplasy andborrowing."Invited paper, to appear in Cambridge University Press,for a special volume on Phylogenetic Methods and the Prehistory of Languages.
  2. L. Nakhleh, D. Ringe, and T. Warnow,"Perfect Phylogenetic Networks: A New Methodologyfor Reconstructing the EvolutionaryHistory of Natural Languages."To appear, Language (Journal of theLinguistic Society of America), 2005.
  3. U. Roshan, B.M.E. Moret, T.L. Williams, and T. Warnow,"Rec-I-DCM3: A fast algorithmic technique forreconstructing large phylogenetic trees,"Proc. IEEE Computer Society Bioinformatics Conference CSB 2004, Stanford U.,2004.(PDF)
  4. L. Nakhleh, K. St. John, U. Roshan, J. Sun,and T. Warnow, 2001."Designing fast converging phylogenetic methods."9th Int'l Conf. on Intelligent Systems for Molecular Biology(ISMB 2001), Copenhagen, in Bioinformatics 17, Suppl. 1, (2001),pp. S190-S198.(PDF)
  5. T. Warnow, B.M.E. Moret, and K. St. John. 2001.Absolute Convergence:True Trees From Short Sequences.ACM-SIAM Symposium on Discrete Algorithms (SODA) 2001.(PS)
  6. L. Nakhleh, U. Roshan, K. St. John, J. Sun, and T. Warnow, 2001."The performance of phylogenetic methods on trees of bounded diameter."Proceedings, The First International Workshop on Algorithmsin Bioinformatics (WABI), 2001, Lecture Notes in Computer Science(LNCS #2149) pp. 214-226, Springer Verlag, Olivier Gascuel and BernardM.E. Moret, eds.(PDF)